Bioinformatics and Phylogenetics: Seminal Contributions of Bernard Moret (Computational Biology #29)
Description
Introduction: A Biography of Bernard Moret
Tandy Warnow
A Review of Approaches for Optimizing Phylogenetic Likelihood Calculations
Alexandros Stamatakis
Numerical Optimization Techniques in Maximum Likelihood Tree Inference
St phane Guindon and Olivier Gascuel
High-Performance Phylogenetic Inference
David A. Bader and Kamesh Madduri
Hands-On Introduction to Sequence-Length Requirements in Phylogenetics
S bastien Roch
Gene Family Evolution - An Algorithmic Framework
Nadia El-Mabrouk and Emmanuel Noutahi
Divide-and-Conquer Tree Estimation: Opportunities and Challenges
Tandy Warnow
Taxonomic Supertree Construction with incertae sedis Taxa
Benjamin D. Redelings and Mark T. Holder
Evolutionary Rate Change and the Transformation from Additive to Ultrametric: Modal Similarity of Orthologs in Fish and Flower Phylogenomics
Daniella Santos Mu oz, Eric Lam and David Sankoff
Ancestral Genome Reconstruction
Jijun Tang
Genome Rearrangement Problems with Single and Multiple Gene Copies: A Review
Ron Zeira and Ron Shamir
Computational Models for Cancer Phylogenetics
Russell Schwartz
Clusters, Trees and Phylogenetic Network Classes
Louxin Zhang
Advances in Computational Methods for Phylogenetic Networks in the Presence of Hybridization
R. A. Leo Elworth, Huw A. Ogilvie, Jiafan Zhu and Luay Nakhleh
A Perspective on Comparative and Functional Genomics
Daniel Doerr and Jens Stoye
Integer Linear Programming in Computational Biology: Overview of ILP, and New Results for Traveling Salesman Problems in Biology
Dan Gusfield